Best Hotels in Boothbay Harbor, Maine

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Agenore Barese

Updated: 17 February 2024 · 3 min

Nestled along the picturesque coastline of Maine, Boothbay Harbor is a hidden gem that captivates travelers with its quintessential New England charm and breathtaking natural beauty. This idyllic destination, renowned for its scenic vistas, vibrant maritime history, and welcoming community, serves as the perfect backdrop for an unforgettable getaway. For those planning a visit, discovering the ideal place to stay is paramount, and the hotels in Boothbay Harbor offer a plethora of choices to suit every traveler's needs, ensuring a comfortable and memorable stay.

Embarking on a journey to Boothbay Harbor, guests are met with accommodations ranging from luxurious waterfront resorts to cozy, intimate inns, each with its own unique character and amenities tailored to enhance your coastal experience. These hotels not only provide a comfortable place to rest but also act as gateways to the adventures that lie in wait, from whale watching and sailing to exploring the town's quaint shops and art galleries. With insights and recommendations on the best hotels in Boothbay Harbor, travelers can effortlessly select their ideal home base, promising both relaxation and access to the area's abundant attractions.

As the heart of your Boothbay Harbor visit, selecting the right hotel is crucial in crafting the perfect vacation narrative. From waking up to the serene views of the harbor to ending the day in the cozy embrace of a finely appointed room, the choice of hotel significantly shapes your experience. With this guide to the top hotels in Boothbay Harbor, we aim to equip you with all the necessary information to make an informed decision, providing an in-depth look into accommodations that promise to elevate your stay, whether you're seeking romance, adventure, or peaceful retreat.
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Our Top 6

(Sorted by rating & number of reviews)

1. Flagship Inn
2. Tugboat Inn
3. Newagen Seaside Inn
4. Harbour Towne Inn On The Waterfront
5. Linekin Bay Resort
6. The Thistle Inn

Family-Friendly Hotels Boothbay Harbor

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Boothbay Harbor
Dec 31, 2025 - Jan 01, 2026

Flagship Inn

7.6

Good

(823 Reviews)

+ 59 photos
The Flagship Inn Boothbay Harbor is a standout option for families looking for comfort and value in one package. This hotel prides itself on offering spacious, family-sized rooms equipped with modern amenities, ensuring a relaxing stay for both kids and parents. The outdoor pool, hot tub, and beautifully landscaped grounds provide ample opportunities for family fun and relaxation. Conveniently located just a short drive from the Maine State Aquarium and the Boothbay Railway Village, the Flagship Inn makes it easy to explore the best of the area. The welcoming staff go above and beyond to cater to the unique needs of families, making it a top choice for those traveling with little ones.
Address: 200 Townsend Avenue
Rating: Good 7.6 (823 Reviews)
Rooms: 72
Price: From 104$

Tugboat Inn

8.1

Good

(752 Reviews)

+ 162 photos
For a unique family lodging experience in Boothbay Harbor, the Tugboat Inn delivers with its maritime-themed accommodations and distinctive charm. Positioned right on the waterfront, this hotel not only offers breathtaking harbor views but also features a variety of room configurations to accommodate families of all sizes. Dining at the on-site restaurant, which offers a kid-friendly menu alongside spectacular views, is an experience in itself. The Tugboat Inn's convenient location allows families to easily explore nearby shops, aquariums, and boat excursions, ensuring a fun-filled vacation. The friendly staff and cozy atmosphere make it a welcoming haven for families looking to immerse themselves in the coastal allure of Boothbay Harbor.
Address: 80 Commercial Street
Rating: Good 8.1 (752 Reviews)
Rooms: 19
Price: From 150$

Romantic Getaways Hotels Boothbay Harbor

The enchanting town of Boothbay Harbor, with its stunning vistas and charming ambiance, serves as the perfect backdrop for a romantic getaway. Couples seeking a memorable retreat will find solace in hotels that specialize in creating an intimate atmosphere through elegant accommodations, fine dining, and personalized services. Whether it’s celebrating an anniversary, a peaceful honeymoon, or simply a much-needed escape, discover the ultimate romantic hotels in Boothbay Harbor where love flourishes amidst the captivating beauty of Maine’s coastline.

Newagen Seaside Inn

9.0

Good

(178 Reviews)

+ 169 photos
Situated at the southern tip of Southport Island, a short drive from the heart of Boothbay Harbor is an adventurer’s dream. This historic inn offers not only breathtaking ocean views but also direct access to rugged coastal trails, bike rentals, and sea kayaking opportunities. The inn encapsulates a blend of traditional charm with modern amenities, making it a cozy retreat after a day of exploration. Guests can unwind by the outdoor pool, enjoy local cuisine at the on-site restaurant, or partake in the evening’s lawn games. With its rich history and a vast array of activities, Newagen Seaside Inn is a sanctuary for those seeking adventure and relaxation in equal measure.
Address: 60 Newagen Colony Rd
Rating: Good 9.0 (178 Reviews)
Rooms: 34
Price: From 333$

Harbour Towne Inn On The Waterfront

9.2

Good

(102 Reviews)

+ 31 photos
Harbour Towne Inn on the Waterfront epitomizes the charm and intimacy ideal for couples on a romantic getaway. This beautifully preserved Victorian-style inn offers individually decorated rooms, each with unique furnishings and an inviting ambiance. The private balconies overlooking the harbor provide the perfect setting for morning coffee or an evening glass of wine, creating moments of shared tranquility. A sumptuous breakfast featuring local Maine delicacies starts each day on a delightful note. The Inn’s garden, with its lush surroundings and waterfront views, offers a serene retreat within walking distance to the heart of Boothbay Harbor’s shops and restaurants. The attentive staff and cozy atmosphere at Harbour Towne Inn ensure a romantic experience that couples will cherish.
Address: 71 Townsend Avenue
Rating: Good 9.2 (102 Reviews)
Rooms: 11
Price: From 217$

Adventure Seekers’ Haven Hotels Boothbay Harbor

Boothbay Harbor isn't just a retreat for those seeking peace; it's a paradise for adventurers and outdoor enthusiasts. The hotels in this category are chosen for their proximity to exhilarating activities — from sailing and kayaking to hiking trails showcasing Maine's rugged beauty. These accommodations don't just offer a place to rest your head after a day of adventure but enhance your experience with their unique offerings, including equipment rentals, guided tours, and tailored advice to help you explore the wild side of Boothbay Harbor.

Linekin Bay Resort

8.5

Good

(246 Reviews)

+ 178 photos
Linekin Bay Resort is a perfect basecamp for adventure lovers. This all-inclusive resort, set on 20 oceanfront acres, promises an active getaway with sailing lessons, kayaking, and paddleboarding right at your fingertips. The rustic, yet comfortable cabins and lodges provide a serene place to recharge, with decks overlooking the water or nestled in the forest. Guests can enjoy the heated saltwater pool, on-site dining with panoramic views, and easy access to some of the region’s premier hiking trails. The resort’s enthusiastic staff are ready to help plan your adventures, ensuring an unforgettable stay filled with outdoor excitement.
Address: 92 Wall Point Road
Rating: Good 8.5 (246 Reviews)
Rooms: 27
Price: From 899$

The Thistle Inn

8.8

Good

(50 Reviews)

+ 75 photos
The Thistle Inn invites couples into a world of historic charm and romantic ambiance. Built in 1861, this quaint inn marries the elegance of the past with the comforts of the present, offering a unique getaway experience. The cozy rooms, adorned with antique furnishings and soft, inviting colors, set the stage for romance. An evening at the Inn’s distinguished restaurant, which serves exquisite dishes in a candlelit setting, promises a culinary journey to complement your romantic escape. The proximity to Boothbay Harbor’s scenic walks and breathtaking sunsets adds to the allure, making The Thistle Inn a preferred destination for couples in search of romance and tranquility.
Address: 55 Oak Street
Rating: Good 8.8 (50 Reviews)
Rooms: 6
Price: From 199$

Serene Wellness Retreats Hotels Boothbay Harbor

For travelers seeking a more introspective journey, Boothbay Harbor offers serene wellness retreat options. These hotels and inns provide a tranquil setting for relaxation, rejuvenation, and reflection. From spa services and mindfulness workshops to culinary experiences focusing on healthy, local produce, these accommodations pamper guests while connecting them with the peaceful aspects of coastal Maine’s natural environment.